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microbe-model

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History: 19 commits

Miyu Horiuchi

Claude Opus 4.7 (1M context)

Phase E scaffolding: MediaDive integration + strain↔medium links

3d34be9 about 1 month ago

artifacts
Final overnight commit: trained baseline + eval report + summary about 1 month ago
scripts
Phase E scaffolding: MediaDive integration + strain↔medium links about 1 month ago
src
Phase E scaffolding: MediaDive integration + strain↔medium links about 1 month ago
tests
Add v1 composition features (tetranucleotides + codon usage) about 1 month ago
.env.example

238 Bytes
Rewrite BacDive client for v2 public API (no auth required) about 1 month ago
.gitattributes

88 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline about 1 month ago
.gitignore

632 Bytes
Final overnight commit: trained baseline + eval report + summary about 1 month ago
.python-version

5 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline about 1 month ago
OVERNIGHT_SUMMARY.md

2.61 kB
Final cleanup: sync OVERNIGHT_SUMMARY.md + fix size display for small files about 1 month ago
README.md

5.33 kB
Update README to reflect current state about 1 month ago
pyproject.toml

834 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline about 1 month ago
uv.lock

152 kB
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline about 1 month ago