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microbe-model

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30.5 MB

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2 contributors

History: 43 commits

Miyu Horiuchi

Fix Space root health checks

e2d32ba 6 days ago

api
Fix Space root health checks 6 days ago
artifacts
Deploy hybrid catalog predictions 6 days ago
data
UI redesign: Prototype A "Lab notebook" from Claude Design bundle 23 days ago
docs
v2 results: ESM-2 t6 (8M, 20-protein sample) loses to v1 hand-crafted features on all 4 phenotype targets 27 days ago
models
Add unified strain catalog (100K rows w/ provenance) + selective weak supervision for pH 20 days ago
scripts
Add unified strain catalog (100K rows w/ provenance) + selective weak supervision for pH 20 days ago
src
Fix _derive_salt to pick optimum entries — salt MAE 2.52 → 2.17 (-13.7%) 21 days ago
tests
Tests for media recommender (3 passing) — ROC-AUC > 0.6 on synthetic signal 29 days ago
web
Surface hybrid oxygen source in UI 7 days ago
.dockerignore

879 Bytes
HF Spaces: Dockerfile for v2 (FastAPI + React) deployment 23 days ago
.env.example

238 Bytes
Rewrite BacDive client for v2 public API (no auth required) 30 days ago
.gitattributes

88 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline 30 days ago
.gitignore

2.15 kB
Deploy hybrid catalog predictions 6 days ago
.python-version

5 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline 30 days ago
Dockerfile

2.88 kB
Deploy hybrid catalog predictions 6 days ago
OVERNIGHT_SUMMARY.md

3.12 kB
Final demo deliverable: v1 baseline + 5K uncultured predictions + recommender online 28 days ago
README.md

14.7 kB
Deploy hybrid catalog predictions 6 days ago
app.py

55.4 kB
UI redesign: Prototype A "Lab notebook" from Claude Design bundle 23 days ago
pyproject.toml

1.05 kB
v2 architecture: FastAPI backend + React frontend (pixel-perfect Prototype A) 23 days ago
requirements.txt

208 Bytes
v2 architecture: FastAPI backend + React frontend (pixel-perfect Prototype A) 23 days ago
uv.lock

470 kB
v2 architecture: FastAPI backend + React frontend (pixel-perfect Prototype A) 23 days ago