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miyuiu
/
microbe-model
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Fetching metadata from the HF Docker repository...
main
microbe-model
30.5 MB
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2 contributors
History:
43 commits
Miyu Horiuchi
Fix Space root health checks
e2d32ba
6 days ago
api
Fix Space root health checks
6 days ago
artifacts
Deploy hybrid catalog predictions
6 days ago
data
UI redesign: Prototype A "Lab notebook" from Claude Design bundle
23 days ago
docs
v2 results: ESM-2 t6 (8M, 20-protein sample) loses to v1 hand-crafted features on all 4 phenotype targets
27 days ago
models
Add unified strain catalog (100K rows w/ provenance) + selective weak supervision for pH
20 days ago
scripts
Add unified strain catalog (100K rows w/ provenance) + selective weak supervision for pH
20 days ago
src
Fix _derive_salt to pick optimum entries — salt MAE 2.52 → 2.17 (-13.7%)
21 days ago
tests
Tests for media recommender (3 passing) — ROC-AUC > 0.6 on synthetic signal
29 days ago
web
Surface hybrid oxygen source in UI
7 days ago
.dockerignore
879 Bytes
HF Spaces: Dockerfile for v2 (FastAPI + React) deployment
23 days ago
.env.example
238 Bytes
Rewrite BacDive client for v2 public API (no auth required)
30 days ago
.gitattributes
88 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline
30 days ago
.gitignore
2.15 kB
Deploy hybrid catalog predictions
6 days ago
.python-version
Safe
5 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline
30 days ago
Dockerfile
2.88 kB
Deploy hybrid catalog predictions
6 days ago
OVERNIGHT_SUMMARY.md
3.12 kB
Final demo deliverable: v1 baseline + 5K uncultured predictions + recommender online
28 days ago
README.md
14.7 kB
Deploy hybrid catalog predictions
6 days ago
app.py
55.4 kB
UI redesign: Prototype A "Lab notebook" from Claude Design bundle
23 days ago
pyproject.toml
1.05 kB
v2 architecture: FastAPI backend + React frontend (pixel-perfect Prototype A)
23 days ago
requirements.txt
208 Bytes
v2 architecture: FastAPI backend + React frontend (pixel-perfect Prototype A)
23 days ago
uv.lock
470 kB
v2 architecture: FastAPI backend + React frontend (pixel-perfect Prototype A)
23 days ago