Datasets:

electricsheepafrica
/

malaria-rdt-microscopy

id int64	age int64	sex string	pregnant int64	under_5 int64	facility_level string	true_malaria int64	parasite_species string	parasite_density int64	severe_malaria int64	fever int64	rdt_done int64	rdt_stockout int64	rdt_type string	rdt_result string	rdt_invalid int64	rdt_tat_min int64	microscopy_done int64	microscopy_result string	parasite_count_done int64	species_identified int64	microscopy_tat_min int64	clinical_diagnosis_only int64	malaria_diagnosed int64	act_prescribed int64	act_stockout int64	iv_artesunate int64	negative_treated int64	eqa_participating int64	slide_quality_adequate int64	year int64
1	15	male	0	0	community	0	none	0	0	1	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	0	0	2,021
2	22	female	0	0	dispensary	1	p_falciparum	1,186	0	1	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	1	0	0	0	0	0	0	2,021
3	16	male	0	0	dispensary	0	none	0	0	0	1	0	hrp2_only	negative	0	15	1	negative	0	0	149	0	0	0	0	0	0	0	0	2,021
4	14	female	0	0	health_centre	1	p_falciparum	7,714	0	1	1	0	hrp2_pldh	positive	0	24	0	not_done	0	0	0	0	1	0	0	0	0	0	0	2,022
5	22	male	0	0	dispensary	1	p_falciparum	737	0	1	1	0	hrp2_pldh	positive	0	18	0	not_done	0	0	0	0	1	1	0	0	0	1	0	2,019
6	4	male	0	1	health_centre	0	none	0	0	1	1	0	hrp2_only	negative	0	11	1	negative	0	0	140	0	0	0	0	0	0	0	1	2,023
7	9	female	0	0	dispensary	1	p_falciparum	3,006	0	1	1	0	hrp2_only	positive	0	21	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,019
8	13	male	0	0	dispensary	1	p_falciparum	44,897	0	1	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	1	0	2,023
9	5	female	0	0	hospital	0	none	0	0	1	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	0	0	2,022
10	7	male	0	0	community	0	none	0	0	1	0	1	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	0	0	2,022
11	13	male	0	0	community	1	p_falciparum	1,684	0	1	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	0	0	2,020
12	7	male	0	0	hospital	0	none	0	0	0	1	0	hrp2_pldh	negative	0	26	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,021
13	16	female	0	0	community	1	p_falciparum	66,349	0	1	1	0	hrp2_only	positive	0	19	1	positive	1	0	52	0	1	1	0	0	0	0	1	2,020
14	9	female	0	0	community	1	p_falciparum	10,404	0	1	1	0	pldh_only	positive	1	21	0	not_done	0	0	0	0	1	1	0	0	0	1	0	2,021
15	80	female	0	0	community	0	none	0	0	1	0	1	not_done	not_done	0	0	1	negative	0	0	50	0	0	0	0	0	0	0	1	2,023
16	70	male	0	0	health_centre	0	none	0	0	0	1	0	hrp2_only	negative	0	29	1	negative	0	0	137	0	0	0	0	0	0	0	1	2,020
17	22	male	0	0	health_centre	1	p_falciparum	3,497	1	1	1	0	hrp2_pldh	positive	0	20	0	not_done	0	0	0	0	1	1	0	1	0	0	0	2,020
18	42	male	0	0	hospital	0	none	0	0	1	1	0	hrp2_only	negative	0	24	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,023
19	14	female	0	0	community	1	p_falciparum	6,285	0	1	1	0	hrp2_only	positive	0	28	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,021
20	5	male	0	0	community	0	none	0	0	1	1	0	hrp2_pldh	negative	0	18	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,022
21	4	female	0	1	community	1	p_falciparum	15,421	0	1	0	1	not_done	not_done	0	0	0	not_done	0	0	0	1	1	0	0	0	0	0	0	2,023
22	5	male	0	0	dispensary	1	p_falciparum	1,879	0	1	1	0	hrp2_pldh	positive	0	17	1	positive	0	1	95	0	1	0	1	0	0	0	0	2,020
23	6	male	0	0	health_centre	1	p_vivax	1,021	0	1	1	0	hrp2_pldh	positive	0	26	0	not_done	0	0	0	0	1	0	1	0	0	0	0	2,022
24	2	female	0	1	dispensary	1	p_falciparum	452	0	1	1	0	pldh_only	positive	0	20	0	not_done	0	0	0	0	1	0	1	0	0	0	0	2,022
25	13	male	0	0	community	1	p_falciparum	3,819	0	1	0	0	not_done	not_done	0	0	1	positive	0	0	66	0	1	0	1	0	0	0	0	2,023
26	28	female	1	0	health_centre	1	p_falciparum	38,084	0	0	1	0	hrp2_only	positive	0	13	1	positive	0	0	173	0	1	1	0	0	0	0	0	2,021
27	16	female	0	0	health_centre	0	none	0	0	1	1	0	hrp2_pldh	negative	0	19	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,019
28	12	male	0	0	health_centre	0	none	0	0	0	1	0	hrp2_only	negative	0	14	1	negative	0	0	186	0	0	0	0	0	0	0	1	2,022
29	9	female	0	0	health_centre	0	none	0	0	1	1	0	hrp2_only	negative	0	20	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,022
30	6	male	0	0	community	0	none	0	0	1	1	0	hrp2_only	negative	0	18	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,019
31	2	female	0	1	health_centre	1	p_falciparum	525	0	0	0	0	not_done	not_done	0	0	1	negative	0	0	106	0	0	0	0	0	0	0	1	2,020
32	15	male	0	0	health_centre	0	none	0	0	0	1	0	pldh_only	negative	0	17	1	negative	0	0	224	0	0	0	0	0	0	0	1	2,023
33	17	male	0	0	health_centre	0	none	0	0	1	1	1	hrp2_only	negative	0	19	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,019
34	5	female	0	0	health_centre	0	none	0	0	1	1	0	hrp2_pldh	negative	0	14	1	negative	0	0	84	0	0	0	0	0	0	0	0	2,022
35	6	male	0	0	health_centre	1	p_vivax	11,382	0	1	1	0	hrp2_pldh	positive	0	26	0	not_done	0	0	0	0	1	0	0	0	0	0	0	2,023
36	9	female	0	0	hospital	0	none	0	0	1	1	0	pldh_only	negative	0	29	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,020
37	4	female	0	1	dispensary	0	none	0	0	1	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	0	0	2,023
38	18	female	1	0	health_centre	1	p_falciparum	7,116	0	1	1	0	hrp2_pldh	positive	0	17	1	negative	0	0	144	0	1	1	0	0	0	0	0	2,020
39	1	male	0	1	community	1	p_falciparum	3,138	0	0	0	1	not_done	not_done	0	0	0	not_done	0	0	0	1	0	0	0	0	0	0	0	2,023
40	61	male	0	0	health_centre	1	p_falciparum	372	0	0	1	1	hrp2_only	positive	1	15	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,023
41	11	female	0	0	health_centre	0	none	0	0	1	1	0	hrp2_pldh	negative	0	21	1	negative	0	0	137	0	0	0	0	0	0	0	1	2,022
42	16	female	0	0	dispensary	0	none	0	0	0	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	0	0	0	0	0	0	0	2,022
43	39	female	0	0	dispensary	0	none	0	0	1	0	1	not_done	not_done	0	0	1	negative	0	0	83	0	0	0	0	0	0	0	1	2,019
44	5	male	0	0	hospital	0	none	0	0	1	1	0	hrp2_only	positive	0	14	1	negative	0	0	64	0	1	1	0	0	0	0	0	2,020
45	29	male	0	0	dispensary	0	none	0	0	1	1	0	hrp2_only	negative	0	20	1	negative	0	0	127	0	0	0	0	0	0	0	1	2,019
46	1	male	0	1	dispensary	0	none	0	0	0	1	0	hrp2_pldh	negative	0	15	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,021
47	61	female	0	0	health_centre	0	none	0	0	1	1	0	hrp2_only	negative	0	23	1	positive	1	0	235	0	1	0	1	0	1	0	1	2,020
48	14	female	0	0	health_centre	0	none	0	0	0	1	1	pldh_only	negative	0	21	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,022
49	10	male	0	0	dispensary	1	p_falciparum	342	1	1	1	0	hrp2_only	positive	0	21	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,021
50	14	male	0	0	community	0	none	0	0	1	1	0	hrp2_only	negative	0	14	1	negative	0	0	136	0	0	0	0	0	0	0	1	2,022
51	12	male	0	0	dispensary	0	none	0	0	0	0	0	not_done	not_done	0	0	1	negative	0	0	83	0	0	0	0	0	0	1	1	2,022
52	9	female	0	0	health_centre	0	none	0	0	0	1	0	hrp2_pldh	negative	0	24	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,020
53	12	male	0	0	health_centre	1	p_falciparum	273	0	1	1	0	hrp2_pldh	positive	0	17	0	not_done	0	0	0	0	1	1	0	0	0	1	0	2,021
54	21	female	0	0	hospital	1	p_falciparum	4,281	0	0	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	0	0	0	0	0	1	0	2,020
55	32	female	1	0	community	0	none	0	0	1	1	0	hrp2_only	negative	0	15	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,021
56	13	female	0	0	health_centre	0	none	0	0	1	1	1	hrp2_only	negative	0	21	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,022
57	30	female	0	0	dispensary	1	p_falciparum	3,103	0	0	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	0	0	0	0	0	0	0	2,022
58	9	male	0	0	health_centre	0	none	0	0	1	0	1	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	0	0	2,019
59	23	female	0	0	dispensary	0	none	0	0	1	0	1	not_done	not_done	0	0	0	not_done	0	0	0	1	1	0	0	0	0	0	0	2,020
60	17	male	0	0	hospital	1	p_falciparum	144,577	0	1	1	0	hrp2_only	positive	0	18	1	positive	1	0	131	0	1	0	1	0	0	0	1	2,022
61	3	male	0	1	community	1	p_falciparum	15,071	0	1	1	0	hrp2_pldh	positive	0	24	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,021
62	15	female	0	0	community	0	none	0	0	0	1	0	hrp2_only	negative	0	23	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,019
63	4	male	0	1	community	0	none	0	0	1	0	1	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	0	0	2,022
64	15	male	0	0	dispensary	0	none	0	0	0	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	0	0	0	0	0	0	0	2,023
65	14	female	0	0	hospital	0	none	0	0	0	1	0	pldh_only	negative	0	24	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,021
66	6	female	0	0	community	0	none	0	0	0	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	0	0	0	0	0	0	0	2,021
67	38	female	0	0	health_centre	0	none	0	0	1	1	0	hrp2_pldh	negative	1	14	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,020
68	10	male	0	0	health_centre	0	none	0	0	1	1	0	hrp2_pldh	negative	0	21	1	negative	0	0	125	0	0	0	0	0	0	0	1	2,023
69	20	male	0	0	dispensary	0	none	0	0	0	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	0	0	0	0	0	0	0	2,019
70	17	female	0	0	dispensary	0	none	0	0	1	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	1	0	0	0	0	0	0	2,021
71	39	female	0	0	community	1	p_falciparum	27,383	0	1	0	1	not_done	not_done	0	0	1	negative	0	0	111	0	0	0	0	0	0	0	0	2,020
72	9	female	0	0	community	0	none	0	0	0	1	0	hrp2_pldh	negative	0	19	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,021
73	2	male	0	1	community	1	p_falciparum	2,809	0	1	1	0	hrp2_only	positive	0	20	0	not_done	0	0	0	0	1	0	1	0	0	0	0	2,022
74	9	female	0	0	dispensary	0	none	0	0	0	0	1	not_done	not_done	0	0	1	negative	0	0	114	0	0	0	0	0	0	0	0	2,023
75	6	male	0	0	health_centre	0	none	0	0	1	1	0	hrp2_only	positive	0	18	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,021
76	26	female	1	0	health_centre	0	none	0	0	1	1	0	hrp2_only	negative	0	22	1	negative	0	0	90	0	0	0	0	0	0	1	1	2,020
77	24	male	0	0	community	0	none	0	0	1	0	1	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	0	0	2,023
78	33	female	0	0	hospital	0	none	0	0	1	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	0	0	2,021
79	12	male	0	0	dispensary	1	p_falciparum	12,638	1	0	1	0	hrp2_only	positive	0	10	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,021
80	15	female	0	0	health_centre	0	none	0	0	1	1	0	hrp2_only	negative	0	19	1	negative	0	0	155	0	0	0	0	0	0	0	1	2,023
81	8	female	0	0	dispensary	1	p_falciparum	56,800	0	1	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	1	1	0	0	0	1	0	2,023
82	4	female	0	1	health_centre	0	none	0	0	1	1	0	hrp2_only	negative	0	12	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,022
83	12	male	0	0	hospital	0	none	0	0	1	1	0	hrp2_pldh	negative	0	18	1	negative	0	0	141	0	0	0	0	0	0	0	0	2,019
84	16	male	0	0	dispensary	1	p_falciparum	4,835	0	1	1	0	hrp2_only	positive	0	14	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,023
85	17	female	0	0	dispensary	0	none	0	0	1	1	0	pldh_only	negative	0	16	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,019
86	18	female	0	0	hospital	0	none	0	0	1	1	0	hrp2_pldh	negative	0	24	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,020
87	16	female	1	0	community	0	none	0	0	0	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	0	0	0	0	0	1	0	2,023
88	18	female	0	0	community	0	none	0	0	1	1	0	hrp2_only	negative	0	14	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,023
89	39	male	0	0	health_centre	1	p_malariae	12,347	0	0	0	0	not_done	not_done	0	0	1	positive	1	0	132	0	1	1	0	0	0	0	1	2,023
90	71	female	0	0	community	1	p_falciparum	141,648	0	0	1	0	hrp2_pldh	positive	0	15	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,020
91	9	male	0	0	hospital	0	none	0	0	1	1	0	pldh_only	negative	0	16	1	negative	0	0	113	0	0	0	0	0	0	1	0	2,021
92	9	male	0	0	hospital	0	none	0	0	0	1	0	hrp2_pldh	negative	0	28	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,023
93	6	male	0	0	community	0	none	0	0	0	1	0	hrp2_pldh	negative	0	19	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,020
94	64	female	0	0	health_centre	1	p_falciparum	11,639	0	1	1	1	hrp2_only	positive	0	16	1	negative	0	0	104	0	1	1	0	0	0	0	0	2,023
95	4	female	0	1	health_centre	0	none	0	0	1	1	0	hrp2_only	negative	0	20	1	negative	0	0	53	0	0	0	0	0	0	0	0	2,023
96	34	female	0	0	community	0	none	0	0	0	0	0	not_done	not_done	0	0	0	not_done	0	0	0	1	0	0	0	0	0	1	0	2,019
97	2	female	0	1	health_centre	0	none	0	0	1	1	1	hrp2_only	negative	0	15	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,021
98	14	male	0	0	dispensary	0	none	0	0	1	1	0	hrp2_only	negative	0	17	0	not_done	0	0	0	0	0	0	0	0	0	0	0	2,022
99	6	male	0	0	community	1	p_vivax	6,167	0	1	1	0	pldh_only	positive	0	12	0	not_done	0	0	0	0	1	0	0	0	0	0	0	2,023
100	4	male	0	1	dispensary	0	none	0	0	1	1	0	hrp2_pldh	positive	0	11	0	not_done	0	0	0	0	1	1	0	0	0	0	0	2,021

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Malaria RDT & Microscopy

Abstract

Synthetic dataset modeling malaria diagnostic services across three SSA scenarios. Captures RDT and microscopy availability, test accuracy, parasite density, HRP2 deletions, ACT treatment, stockouts, and clinical-only diagnosis rates. Parameterized from WHO malaria reports and diagnostic validation research.

Parameterization Evidence

Parameter	Value	Source	Year
Global malaria cases	249M, 94% in Africa	WHO World Malaria Report	2023
HRP2 RDT sensitivity	95% (>100 parasites/uL)	Wongsrichanalai et al. Lancet ID	2007
RDT specificity	90-95%	Wongsrichanalai et al.	2007
HRP2 gene deletions	Concern in Eritrea/Ethiopia/DRC	Berhane et al. Emerg Infect Dis	2018
Expert microscopist sensitivity	>95%	WHO QA Manual	2021
Routine microscopist sensitivity	60-80%	WHO QA Manual	2021

Validation

Usage

from datasets import load_dataset
ds = load_dataset("electricsheepafrica/malaria-rdt-microscopy", name="rdt_primary")
df = ds['train'].to_pandas()

References

WHO (2023). World Malaria Report
Wongsrichanalai C et al. (2007). RDTs for malaria. Lancet Infect Dis. DOI: 10.1016/S1473-3099(07)70064-8
Berhane A et al. (2018). HRP2 deletions. Emerg Infect Dis. DOI: 10.3201/eid2411.180712
WHO (2021). Malaria microscopy QA manual

License

CC-BY-4.0

Downloads last month: 26

Size of downloaded dataset files:

3.34 MB

Size of the auto-converted Parquet files:

687 kB

Number of rows:

30,000