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Browse files- app.py +30 -0
- rag_dspy.py +74 -0
- readme.md +43 -0
- requirements.txt +8 -3
app.py
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import streamlit as st
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from rag_dspy import MedicalRAG
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st.set_page_config(page_title="Medical QA Bot", page_icon="🩺")
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st.title("🩺 Medical QA Bot")
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st.write("Ask a medical question and get an answer based on retrieved medical literature.")
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if "history" not in st.session_state:
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st.session_state["history"] = []
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rag_chain = MedicalRAG()
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with st.form("chat_form"):
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user_question = st.text_input("Enter your medical question:", "")
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submitted = st.form_submit_button("Get Answer")
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if submitted and user_question.strip():
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with st.spinner("Retrieving answer..."):
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result = rag_chain.forward(user_question)
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answer = result.final_answer
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st.session_state["history"].append((user_question, answer))
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st.markdown(f"**Answer:** {answer}")
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if st.session_state["history"]:
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st.markdown("---")
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st.markdown("### Conversation History")
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for q, a in reversed(st.session_state["history"]):
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st.markdown(f"**Q:** {q}")
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st.markdown(f"**A:** {a}")
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rag_dspy.py
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# rag_dspy.py
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import dspy
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from dspy_qdrant import QdrantRM
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from qdrant_client import QdrantClient, models
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from dotenv import load_dotenv
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import os
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load_dotenv()
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# DSPy setup
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lm = dspy.LM("gpt-4", max_tokens=512,api_key=os.environ.get("OPENAI_API_KEY"))
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client = QdrantClient(url=os.environ.get("QDRANT_CLOUD_URL"), api_key=os.environ.get("QDRANT_API_KEY"))
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collection_name = "medical_chat_bot"
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rm = QdrantRM(
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qdrant_collection_name=collection_name,
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qdrant_client=client,
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vector_name="dense", # <-- MATCHES your vector field in upsert
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document_field="passage_text", # <-- MATCHES your payload field in upsert
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k=20)
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dspy.settings.configure(lm=lm, rm=rm)
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# Manual reranker using ColBERT multivector field
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# Manual reranker using Qdrant’s native prefetch + ColBERT query
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def rerank_with_colbert(query_text):
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from fastembed import TextEmbedding, LateInteractionTextEmbedding
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# Encode query once with both models
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dense_model = TextEmbedding("BAAI/bge-small-en")
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colbert_model = LateInteractionTextEmbedding("colbert-ir/colbertv2.0")
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dense_query = list(dense_model.embed(query_text))[0]
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colbert_query = list(colbert_model.embed(query_text))[0]
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# Combined query: retrieve with dense, rerank with ColBERT
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results = client.query_points(
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collection_name=collection_name,
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prefetch=models.Prefetch(
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query=dense_query,
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using="dense"
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),
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query=colbert_query,
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using="colbert",
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limit=5,
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with_payload=True
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)
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points = results.points
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docs = []
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for point in points:
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docs.append(point.payload['passage_text'])
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return docs
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# DSPy Signature and Module
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class MedicalAnswer(dspy.Signature):
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question = dspy.InputField(desc="The medical question to answer")
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context = dspy.OutputField(desc="The answer to the medical question")
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final_answer = dspy.OutputField(desc="The answer to the medical question")
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class MedicalRAG(dspy.Module):
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def __init__(self):
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super().__init__()
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def forward(self, question):
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reranked_docs = rerank_with_colbert(question)
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context_str = "\n".join(reranked_docs)
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return dspy.ChainOfThought(MedicalAnswer)(
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question=question,
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context=context_str
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)
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readme.md
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# Medical QA Chatbot
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This is a Chain-of-Thought powered medical chatbot that:
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- Retrieves answers from a Qdrant Cloud vector DB using dense + ColBERT multivectors
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- Uses Stanford DSPy to reason step-by-step with retrieved context
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- Supports traceable source highlighting in Chainlit
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- Deployable on Hugging Face Spaces via Docker
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---
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## How to Deploy
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- Add your `OPENAI_API_KEY` as a secret environment variable in Hugging Face Space settings
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- Make sure `qdrant-client` points to your Qdrant Cloud instance in `rag_dspy.py`
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- Run the Space
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## Sample Questions
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### General Medical Knowledge
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- What are the most common symptoms of lupus?
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- How is type 2 diabetes usually managed in adults?
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- What is the difference between viral and bacterial pneumonia?
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### Treatment & Medication
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- What are the first-line medications for treating hypertension?
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- How does metformin work to lower blood sugar?
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### Diagnosis & Tests
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- What diagnostic tests are used to detect rheumatoid arthritis?
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- When is a colonoscopy recommended for cancer screening?
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### Hospital & Patient Care
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- What are the psychosocial challenges faced by cancer patients?
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- How do hospitals manage patients with multidrug-resistant infections?
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### Clinical Guidelines / Rare Topics
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- What is the recommended treatment for acute myocardial infarction in elderly patients?
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requirements.txt
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datasets==3.6.0
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streamlit
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git+https://github.com/stanfordnlp/dspy.git
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python-dotenv==1.1.0
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cachetools
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cloudpickle
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qdrant-client[fastembed]>=1.14.2
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dspy-qdrant
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