""" Load SurvHTE-Bench from HuggingFace Hub. Two interfaces: 1. load_data(dataset_name) → experiment_setups, experiment_repeat_setups (identical output to the original local load_data()) 2. load_splits(dataset_name) → nested dict mirroring prepare_data_split output results[config_name][scenario_key][rand_idx]["train"|"val"|"test"] = (X, W, Y, cate_true) """ import json import numpy as np import pandas as pd import datasets as hf_datasets REPO_ID = "snoroozi/SurvHTE-Bench" SCHEMA = { "synthetic": dict( X_cols=None, # resolved dynamically: cols starting with X + digit W_col="W", y_cols=["observed_time", "event"], cate_col=None, # computed as T1 - T0 idx_col="id", ), "actg_syn": dict( X_cols=["age","wtkg","hemo","homo","drugs","karnof","oprior","z30","zprior","preanti", "race","gender","str2","strat","symptom","treat","offtrt", "cd40","cd420","cd496","r","cd80","cd820"], W_col="W", y_cols=["observed_time", "event"], cate_col="true_cate", idx_col="idx", ), "twin": dict( X_cols=["anemia","cardiac","lung","diabetes","herpes","hydra","hemo","chyper","phyper", "eclamp","incervix","pre4000","preterm","renal","rh","uterine","othermr", "gestat","dmage","dmeduc","dmar","nprevist","adequacy", "dtotord","cigar","drink","wtgain", "pldel_2","pldel_3","pldel_4","pldel_5","resstatb_2","resstatb_3","resstatb_4", "mpcb_1","mpcb_2","mpcb_3","mpcb_4","mpcb_5","mpcb_6","mpcb_7","mpcb_8","mpcb_9"], W_col="W", y_cols=["observed_time", "event"], cate_col="true_cate", idx_col="idx", ), "actgHC": dict( X_cols=["gender","race","hemo","homo","drugs","str2","symptom","age","wtkg","karnof","cd40","cd80"], W_col="trt", y_cols=None, # 10 versions: t0/e0 .. t9/e9 — caller slices Y[:, r*2:(r+1)*2] cate_col="cate_base", idx_col="id", ), "actgLC": dict( X_cols=["gender","race","hemo","homo","drugs","str2","symptom","age","wtkg","karnof","cd40","cd80"], W_col="trt", y_cols=["observed_time_month", "effect_non_censor"], cate_col="cate_base", idx_col="id", ), } # Mirrors SPLIT_SIZES in hf_upload.py SPLIT_SIZES = { "synthetic": (5000, 2500, 2500), "actg_syn": (0.50, 0.25, 0.25), "twin": (0.50, 0.25, 0.25), "actgHC": (0.50, 0.25, 0.25), "actgLC": (0.50, 0.25, 0.25), } def load_data( dataset_name: str, repo_id: str = REPO_ID, ) -> tuple[dict, dict]: """Identical output to local load_data().""" setups_df = hf_datasets.load_dataset(repo_id, name=dataset_name, split="train").to_pandas() meta_cols = {"setup_key", "scenario", "summary_json", "metadata_json"} data_cols = [c for c in setups_df.columns if c not in meta_cols] experiment_setups: dict = {} for (setup_key, scenario), grp in setups_df.groupby(["setup_key", "scenario"], sort=False): info = { "dataset": grp[data_cols].reset_index(drop=True), "summary": json.loads(grp["summary_json"].iloc[0]), } if "metadata_json" in grp.columns and grp["metadata_json"].notna().any(): info["metadata"] = json.loads(grp["metadata_json"].iloc[0]) experiment_setups.setdefault(setup_key, {})[scenario] = info repeats_df = hf_datasets.load_dataset(repo_id, name=f"{dataset_name}_repeats", split="train").to_pandas() idx_cols = [c for c in repeats_df.columns if c != "repeat_key"] if dataset_name in ("actgHC", "actgLC"): experiment_repeat_setups: dict = {} for repeat_key, grp in repeats_df.groupby("repeat_key", sort=False): experiment_repeat_setups[repeat_key] = grp[idx_cols].reset_index(drop=True) else: experiment_repeat_setups = repeats_df[idx_cols].reset_index(drop=True) return experiment_setups, experiment_repeat_setups def load_splits( dataset_name: str, num_repeats: int = 10, repo_id: str = REPO_ID, ) -> dict: """ Returns nested dict mirroring the experiment loop: results[config_name][scenario_key][rand_idx]["train"|"val"|"test"] = (X, W, Y, cate_true) """ schema = SCHEMA[dataset_name] W_col = schema["W_col"] y_cols = schema["y_cols"] cate_col = schema["cate_col"] # Load all 30 splits once raw: dict[tuple, pd.DataFrame] = {} for split_type in ("train", "val", "test"): for r in range(num_repeats): raw[(split_type, r)] = hf_datasets.load_dataset( repo_id, name=f"{dataset_name}_splits", split=f"{split_type}_{r}" ).to_pandas() # Discover (config_name, scenario) pairs from train_0 pairs = list( raw[("train", 0)].groupby(["setup_key", "scenario"], sort=False).groups.keys() ) # Resolve X columns from train_0 sample_df = raw[("train", 0)] if schema["X_cols"] is None: X_cols = [c for c in sample_df.columns if c.startswith("X") and c[1:].isdigit()] else: X_cols = schema["X_cols"] def _extract(df_grp: pd.DataFrame) -> tuple: X = df_grp[X_cols].to_numpy() W = df_grp[W_col].to_numpy() if y_cols is not None: Y = df_grp[y_cols].to_numpy() else: # actgHC: return all t/e cols, caller slices Y[:, r*2:(r+1)*2] te_cols = [col for i in range(10) for col in (f"t{i}", f"e{i}") if col in df_grp.columns] Y = df_grp[te_cols].to_numpy() if cate_col is not None and cate_col in df_grp.columns: cate_true = df_grp[cate_col].to_numpy() else: cate_true = (df_grp["T1"] - df_grp["T0"]).to_numpy() return (X, W, Y, cate_true) results: dict = {} for config_name, scenario_key in pairs: results.setdefault(config_name, {})[scenario_key] = {r: {} for r in range(num_repeats)} for split_type in ("train", "val", "test"): for r in range(num_repeats): df = raw[(split_type, r)] grp = df[ (df["setup_key"] == config_name) & (df["scenario"] == scenario_key) ].reset_index(drop=True) results[config_name][scenario_key][r][split_type] = _extract(grp) return results