Datasets:
powidla
/
SBG

Dataset card Data Studio Files
xet
Community
1
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The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 2 new columns ({'contents', 'mode'}) and 4 missing columns ({'essential_compounds', 'taxonomy', 'id', 'N_R'}).

This happened while the json dataset builder was generating data using

zip://competitive/model_1.json::hf://datasets/powidla/SBG@86a9d71473c4b7f9dc541aa1c4f49bae3b58b25b/competitive1-200000.zip

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 644, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              name: string
              mode: string
              contents: struct<12dgr180: int64, 12dhchol: int64, 12ppd_S: int64, 13ppd: int64, 15dap: int64, 26dap_M: int64, 2ddglcn: int64, 2dmmq8: int64, 2hyoxplac: int64, 2mbut: int64, 2obut: int64, 2omfuc: int64, 2omxyl: int64, 34dhpha: int64, 34dhphe: int64, 3ddlhept: int64, 3dhcdchol: int64, 3dhchol: int64, 3hcinnm: int64, 3hphac: int64, 3hpppn: int64, 3mop: int64, 4abut: int64, 4abz: int64, 4hbz: int64, 4hoxpacd: int64, 4hphac: int64, 4hpro_LT: int64, 4mcat: int64, 5aptn: int64, 5htrp: int64, 5mta: int64, 5mthf: int64, 7dhcdchol: int64, 7ocholate: int64, C02528: int64, Cit_Mg: int64, HC00319: int64, HC02191: int64, HC02194: int64, Lcyst: int64, Lcystin: int64, Lkynr: int64, M03134: int64, Ser_Thr: int64, T_antigen: int64, Tn_antigen: int64, Tyr_ggn: int64, ac: int64, acac: int64, acald: int64, acerA: int64, acgal: int64, acgalglcur: int64, acgalidour2s: int64, acgalidour: int64, acgam: int64, acmana: int64, acnam: int64, actn_R: int64, adchac: int64, ade: int64, adn: int64, adocbl: int64, ahcys: int64, akg: int64, ala_D: int64, ala_L: int64, alaasp: int64, alagln: int64, alaglu: int64, alagly: int64, alahis: int64, alaleu: int64, alathr: int64, alchac: int64, alltn: int64, amet: int64, amp: int64, amylopect900: int64, amylose300: int64, apio_D: int64, arab_D: int64, arab_L: int64, arabinan101: int64, arabinogal: int64, arabinoxyl: int64, arabttr: int64, arbt: int64, arg_L: int64, arsenb: int64, asn_L: int64, aso3: int64, aso4: int64, asp_L: int64, bglc: int
              ...
              34hpp: int64
                child 367, raffin: int64
                child 368, rbflvrd: int64
                child 369, rhamnogalurII: int64
                child 370, rhamnogalurI: int64
                child 371, rib_D: int64
                child 372, ribflv: int64
                child 373, rmn: int64
                child 374, sT_antigen: int64
                child 375, sTn_antigen: int64
                child 376, salcn: int64
                child 377, sbt_D: int64
                child 378, sbt_L: int64
                child 379, sel: int64
                child 380, selni: int64
                child 381, ser_D: int64
                child 382, ser_L: int64
                child 383, sheme: int64
                child 384, so3: int64
                child 385, so4: int64
                child 386, spmd: int64
                child 387, srtn: int64
                child 388, starch1200: int64
                child 389, strch1: int64
                child 390, strch2: int64
                child 391, stys: int64
                child 392, succ: int64
                child 393, sucr: int64
                child 394, sulfac: int64
                child 395, taur: int64
                child 396, tchola: int64
                child 397, tdchola: int64
                child 398, tet: int64
                child 399, thf: int64
                child 400, thm: int64
                child 401, thmmp: int64
                child 402, thr_L: int64
                child 403, thymd: int64
                child 404, tma: int64
                child 405, tmao: int64
                child 406, tre: int64
                child 407, trp_L: int64
                child 408, trypta: int64
                child 409, tsul: int64
                child 410, ttdca: int64
                child 411, tym: int64
                child 412, tyr_L: int64
                child 413, uchol: int64
                child 414, ura: int64
                child 415, urea: int64
                child 416, uri: int64
                child 417, val_L: int64
                child 418, xan: int64
                child 419, xtsn: int64
                child 420, xyl_D: int64
                child 421, xylan: int64
                child 422, xyluglc: int64
                child 423, zn2: int64
              to
              {'id': Value('int64'), 'name': Value('string'), 'N_R': Value('int64'), 'taxonomy': {'k': Value('int64'), 'tax_distance': List(Value('string'))}, 'essential_compounds': List(Value('string'))}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1451, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 994, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 2 new columns ({'contents', 'mode'}) and 4 missing columns ({'essential_compounds', 'taxonomy', 'id', 'N_R'}).
              
              This happened while the json dataset builder was generating data using
              
              zip://competitive/model_1.json::hf://datasets/powidla/SBG@86a9d71473c4b7f9dc541aa1c4f49bae3b58b25b/competitive1-200000.zip
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

id
int64
name
string
N_R
int64
taxonomy
dict
essential_compounds
list
1
Abiotrophia_defectiva_ATCC_49176
1,060
{ "k": 1, "tax_distance": [ "3.4222699595", "0", "0.4937068659", "1.1355502456", "1.0092035055", "1.0543321924", "1.0356268946", "1.0326843003", "1.0966658986", "1.0150218067", "1.0320865101", "1.1402088239", "1.1132266022", "1.3412405601", "1.3895973772", "1.4199298878", "1.3002794899", "1.3092036067", "1.3446780823", "1.0960649087", "1.031393932", "0.9959897907", "1.0349314351", "1.0465822362", "0.9384685166", "1.0974978289", "1.0941432575", "1.0965043119", "1.0807380219", "1.072052259", "1.0745031651", "1.2032723306", "1.2128101334", "1.2091762234", "1.224872292", "1.193370712", "1.2161166561", "1.2344225676", "1.2153906046", "1.5083312636", "1.2531728849", "1.1718118289", "1.1785771351", "1.1811847152", "1.1779529732", "1.1809263549", "1.17602775", "1.1764127853", "1.1705978745", "1.1626366849", "1.1042145069", "1.1097269069", "1.1039860736", "1.076139803", "1.0826615471", "1.1117635443", "1.0856866575", "1.0836706299", "1.1044250355", "1.1020851408", "1.0853433133", "1.1270118201", "1.1290866099", "1.1277557167", "1.1421469342", "1.1438690961", "1.1438690961", "1.1505146788", "1.1505146788", "1.1505146788", "1.1505146788", "1.1505146788", "1.1505146788", "1.1505146788", "1.1505146788", "1.1464353161", "1.1467810533", "1.1403493457", "1.1508418203", "1.1499365784", "1.1460384088", "1.1442957352", "1.145614305", "1.1421124245", "1.1370346762", "1.1403798018", "1.1458255686", "1.1412873769", "1.1262874208", "1.1346585357", "1.1293831505", "1.1455310915", "1.1408338023", "1.1449673716", "1.122927661", "1.1175274772", "1.1315938323", "1.1422542413", "1.1590512843", "1.1414609941", "1.1314658756", "1.130148058", "1.1108976781", "1.1237761671", "1.1826486121", "1.1774967004", "1.2443929577", "1.2105537017", "1.1477450609", "1.1514713177", "1.1542047848", "1.1471007033", "1.1471007033", "1.1284768011", "1.1313809474", "1.1232804307", "1.1588061294", "1.1220630949", "1.0999721815", "1.168084988", "1.1548139927", "1.1552395851", "1.3383604793", "1.3455509301", "1.366991943", "1.2321666801", "1.4560913156", "1.4627665497", "1.4474034574", "1.4670374626", "1.4562245486", "1.4612910349", "1.4527947573", "1.4458446522", "1.4367149551", "1.4373730755", "1.4562869987", "1.4294055548", "1.4114413443", "1.5053292852", "1.5067031589", "1.4760147466", "1.5335944372", "1.4711730247", "1.4766669675", "1.4737059424", "1.4984129275", "1.4875904787", "1.3957474067", "1.3668373172", "1.4288338582", "1.406732565", "1.3980907587", "1.3929705676", "1.4298421933", "1.4323373192", "1.4041492503", "1.3925112964", "1.3960978054", "1.4650509162", "1.4717592983", "1.4413883517", "1.5653064249", "1.5597915295", "1.5621325807", "1.5198556545", "1.516001675", "1.5539082487", "1.5457314344", "1.5144894119", "1.5160487706", "1.5340687643", "1.4907639696", "1.4799278406", "1.4810883931", "1.5145747345", "1.5027511818", "1.4841243246", "1.5031129469", "1.4844449482", "1.4982598904", "1.4924773194", "1.4914089374", "1.5119673891", "1.5077548417", "1.4906357963", "1.5248641703", "1.5096299286", "1.5147422376", "1.5141355521", "1.4785339217", "1.4745137135", "1.4590463619", "1.4773928671", "1.4743264923", "1.4486348985", "1.4316221506", "1.4263144997", "1.4310562843", "1.4301976736", "1.4629636335", "1.4619829717", "1.4860227693", "1.4639137423", "1.4244057503", "1.4275701611", "1.4526320531", "1.448923169", "1.4246725523", "1.4172152024", "1.4195684617", "1.4287459966", "1.4329156081", "1.4755187089", "1.4598149382", "1.453653175", "1.4473729302", "1.4352703126", "1.438440652", "1.4806127414", "1.9150045726", "1.9997827717", "1.9123181966", "1.8975004845", "1.8758278517", "1.4295055106", "1.4483099166", "1.4982427817", "1.5155761717", "1.5308133747", "1.6443505123", "1.5981211194", "1.6197727936", "1.5784394475", "1.491777759", "1.5041601019", "1.5106511731", "1.6148345487", "1.6060350161", "1.6041162851", "1.6301185662", "1.6274261306", "1.618658075", "1.6501786986", "1.6582621631", "1.6424508899", "1.6158326401", "1.610487067", "1.6158977429", "1.6046046017", "1.5495737069", "1.5546585288", "1.5539033053", "1.6007148898", "1.5561446104", "1.538596412", "1.6160212182", "1.5692885784", "1.5443711159", "1.5574066071", "1.5280220935", "1.5320721413", "1.6676788031", "1.6700325895", "1.6748097992", "1.6801553972", "1.6458543714", "1.7065101207", "1.7133462361", "1.7098572336", "1.722522299", "1.7086062562", "1.68839035", "1.6797895813", "1.7264414495", "1.7457197222", "1.7963987421", "1.6393211259", "1.6084938318", "1.7014995457", "1.7004828458", "1.6877037701", "1.644628483", "1.7094517972", "1.700395045", "1.7030473073", "1.7341866126", "1.6758454794", "1.6611117766", "1.6427366483", "1.671052287", "1.6425593617", "1.697705279", "1.728698679", "1.7513315268", "1.7080153498", "1.6793615613", "1.699608458", "1.6793620696", "1.6657480947", "1.6304930238", "1.6654425833", "1.5965321074", "1.6137974784", "1.6966061894", "1.6849715286", "1.6820731023", "1.6922274095", "1.700590295", "1.6899129338", 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[ "2ddglcn", "2hyoxplac", "34dhpha", "34dhphe", "3hcinnm", "3hpppn", "3mop", "4abz", "4hoxpacd", "5htrp", "5mta", "Lcyst", "Lkynr", "ac", "acac", "acgam", "adocbl", "akg", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "alltn", "arab_D", "arab_L", "arbt", "arg_L", "asn_L", "aso3", "aso4", "asp_L", "bhb", "btn", "but", "butso3", "ca2", "cbl1", "cbl2", "cd2", "cgly", "chol", "cit", "cl", "co2", "cobalt2", "csn", "cu2", "cys_L", "dhcinnm", "dhpppn", "dopa", "drib", "ethso3", "fe2", "fe3", "fru", "fum", "galctn_D", "galt", "gam", "gcald", "glc_D", "glcn", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyb", "glyc3p", "glyc", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hdca", "hexs", "hg2", "his_L", "hista", "hxan", "ile_L", "ind3ac", "isetac", "k", "lac_L", "leu_L", "lys_L", "mal_L", "malt", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn7", "mso3", "n2", "n2o", "na1", "nac", "nh4", "no2", "no3", "no", "o2", "ocdca", "orn", "pac", "pb", "phe_L", "pheme", "pi", "ppa", "ppi", "pro_L", "ptrc", "pydam", "pydx", "pydxn", "rib_D", "salcn", "sbt_D", "ser_L", "so4", "spmd", "srtn", "succ", "sucr", "sulfac", "taur", "tet", "thm", "thr_L", "tre", "trp_L", "trypta", "tsul", "ttdca", "tym", "tyr_L", "ura", "val_L", "xyl_D", "zn2" ]
10
Acinetobacter_johnsonii_SH046
1,610
{ "k": 10, "tax_distance": [ "3.3293716648", "1.0150218067", "1.0083225776", "1.2349052847", "0.3507584296", "0.3958871165", "0.2371807847", "0.2342381904", "0.2982197887", "0", "0.2880310688", "0.8053425942", "0.7783603725", "1.0063743304", "1.0547311475", "1.0850636581", "0.9654132602", "0.974337377", "1.0098118526", "1.003166614", "0.9384956373", "0.903091496", "0.9420331404", "0.9536839415", "0.8455702219", "1.0045995342", "1.0012449628", "1.0036060172", "0.9878397272", "0.9791539643", "0.9816048704", "1.1103740359", "1.1199118387", "1.1162779287", "1.1319739973", "1.1004724173", "1.1232183614", "1.1415242729", "1.1224923099", "1.4154329689", "1.1602745902", "1.0789135342", "1.0856788404", "1.0882864205", "1.0850546785", "1.0880280602", "1.0831294553", "1.0835144906", "1.0776995798", "1.0697383902", "1.0113162122", "1.0168286122", "1.0110877789", "0.9832415083", "0.9897632524", "1.0188652496", "0.9927883628", "0.9907723352", "1.0115267408", "1.0091868461", "0.9924450186", 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"2.1989813118", "2.1721133887", "2.1800584468", "2.1832006562", "2.1544809407" ] }
[ "2ddglcn", "2hyoxplac", "34dhpha", "34dhphe", "3hcinnm", "3hpppn", "3mop", "4abz", "5htrp", "5mta", "Lcyst", "Lkynr", "ac", "acac", "acgam", "adocbl", "akg", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "alltn", "arab_D", "arab_L", "arbt", "arg_L", "asn_L", "aso3", "aso4", "asp_L", "bhb", "btn", "but", "butso3", "ca2", "cbl1", "cbl2", "cd2", "cgly", "chol", "cit", "cl", "co2", "cobalt2", "csn", "cu2", "cys_L", "dhcinnm", "dhpppn", "dopa", "drib", "ethso3", "fe2", "fe3", "fol", "fru", "fum", "galctn_D", "galt", "gam", "gcald", "glc_D", "glcn", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyb", "glyc3p", "glyc", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hdca", "hexs", "hg2", "his_L", "hista", "hxan", "ile_L", "ind3ac", "isetac", "k", "lac_D", "lac_L", "leu_L", "lys_L", "mal_L", "malt", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn7", "mso3", "n2", "n2o", "na1", "nac", "nh4", "no2", "no3", "o2", "ocdca", "pac", "pb", "phe_L", "pheme", "pi", "ppa", "ppi", "pro_L", "ptrc", "pydam", "pydx", "pydxn", "rib_D", "salcn", "sbt_D", "ser_L", "so4", "spmd", "srtn", "succ", "sucr", "sulfac", "taur", "thm", "thr_L", "tma", "tmao", "tre", "trp_L", "trypta", "tsul", "ttdca", "tym", "tyr_L", "ura", "val_L", "xan", "xyl_D", "zn2" ]
100
Bacteroides_fragilis_NCTC_9343
621
{ "k": 100, "tax_distance": [ "2.5091616256", "1.1414609941", "1.134761765", "1.3613444721", "1.0427443982", "1.0878730851", "1.0691677873", "1.066225193", "1.1302067913", "1.0485626994", "1.0656274028", "1.1737497166", "1.1467674949", "1.3747814528", "1.4231382699", "1.4534707805", "1.3338203826", "1.3427444994", "1.378218975", "0.911203291", "0.8465323143", "0.5960110556", "0.5293606232", "0.4078809465", "0.2337016677", "0.2278904596", "0.2245358882", "0.2268969426", "0.2111306526", "0.2024448897", "0.2048957958", "0.3064817319", "0.3160195347", "0.3123856247", "0.3280816933", "0.2965801133", "0.3193260574", "0.3376319689", "0.3186000059", "0.6115406649", "0.3563822862", "0.2750212302", "0.2817865364", "0.2843941165", "0.2811623745", "0.2841357562", "0.2792371513", "0.2796221866", "0.2738072758", "0.2658460862", "0.2074239082", "0.2129363082", "0.2071954749", "0.1793492043", "0.1858709484", "0.2149729456", "0.1888960588", "0.1868800312", "0.2076344368", "0.2052945421", 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[ "15dap", "26dap_M", "2dmmq8", "2obut", "3mop", "Lcyst", "ac", "acald", "acgam", "ade", "adocbl", "akg", "ala_L", "arbt", "arg_L", "arsenb", "asp_L", "btn", "but", "butso3", "ca2", "cbl1", "cbl2", "cd2", "cgly", "cit", "cl", "co2", "cobalt2", "cro4", "csn", "cu2", "cys_L", "cytd", "dad_2", "dcyt", "dgsn", "ethso3", "fe2", "fe3", "for", "fru", "fum", "galt", "gam", "gcald", "glc_D", "gln_L", "glu_L", "glutar", "glyb", "glyc", "gua", "h2", "h2o", "h", "hexs", "hg2", "hxan", "ile_L", "ins", "isetac", "k", "lac_D", "leu_L", "lys_L", "mal_L", "malt", "man", "met_D", "met_L", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn8", "mso3", "na1", "nac", "nh4", "o2", "ocdca", "orn", "pb", "phe_L", "pheme", "pi", "ppa", "pro_L", "ptrc", "pydam", "pydx", "pydxn", "q8", "ribflv", "salcn", "sbt_D", "ser_L", "sheme", "so4", "spmd", "succ", "sucr", "sulfac", "taur", "thm", "thymd", "tre", "ttdca", "tyr_L", "ura", "uri", "val_L", "xan", "zn2" ]
101
Bacteroides_fragilis_YCH46
1,173
{ "k": 101, "tax_distance": [ "2.4991665071", "1.1314658756", "1.1247666465", "1.3513493536", "1.0327492797", "1.0778779666", "1.0591726688", "1.0562300745", "1.1202116728", "1.0385675809", "1.0556322843", "1.1637545981", "1.1367723764", "1.3647863343", "1.4131431514", "1.443475662", "1.3238252641", "1.3327493809", "1.3682238565", "0.9012081725", "0.8365371958", "0.5860159371", "0.5193655047", "0.397885828", "0.2237065492", "0.2178953411", "0.2145407697", "0.2169018241", "0.2011355341", "0.1924497712", "0.1949006773", "0.2964866134", "0.3060244162", "0.3023905062", "0.3180865748", "0.2865849948", "0.3093309389", "0.3276368504", "0.3086048874", "0.6015455464", "0.3463871677", "0.2650261117", "0.2717914179", "0.274398998", "0.271167256", "0.2741406377", "0.2692420328", "0.2696270681", "0.2638121573", "0.2558509677", "0.1974287897", "0.2029411897", "0.1972003564", "0.1693540858", "0.1758758299", "0.2049778271", "0.1789009403", "0.1768849127", "0.1976393183", "0.1952994236", 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[ "4abz", "Cit_Mg", "Lcyst", "ac", "acald", "acgam", "adocbl", "ala_L", "arbt", "arg_L", "arsenb", "asn_L", "asp_L", "btn", "but", "butso3", "ca2", "cbl1", "cbl2", "cd2", "cgly", "cl", "co2", "cobalt2", "cro4", "ctbt", "cu2", "cys_L", "ddca", "ethso3", "etoh", "fe2", "fe3", "fol", "for", "fru", "fum", "galt", "gam", "gbbtn", "glc_D", "gln_L", "glu_L", "glutar", "gly", "glyb", "h2", "h2o", "h2s", "h", "hdca", "hexs", "hg2", "hxan", "ile_L", "isetac", "k", "lac_D", "lac_L", "leu_L", "lys_L", "mal_L", "malt", "man", "met_D", "met_L", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn7", "mso3", "na1", "nac", "nh4", "nmn", "o2", "ocdca", "orn", "pb", "pheme", "pi", "pnto_R", "pro_L", "ptrc", "pydx", "ribflv", "salcn", "sbt_D", "ser_L", "so4", "spmd", "succ", "sucr", "sulfac", "taur", "tre", "trp_L", "ttdca", "ura", "val_L", "xan", "zn2" ]
102
Bacteroides_graminisolvens_DSM_19988
1,184
{ "k": 102, "tax_distance": [ "2.4978486895", "1.130148058", "1.1234488289", "1.350031536", "1.0314314621", "1.076560149", "1.0578548512", "1.0549122569", "1.1188938552", "1.0372497633", "1.0543144667", "1.1624367805", "1.1354545588", "1.3634685167", "1.4118253338", "1.4421578444", "1.3225074465", "1.3314315633", "1.3669060389", "0.8998903549", "0.8352193782", "0.5846981195", "0.5180476871", "0.3965680104", "0.2223887316", "0.2165775235", "0.2132229521", "0.2155840065", "0.1998177165", "0.1911319536", "0.1935828597", "0.2951687958", "0.3047065986", "0.3010726886", "0.3167687572", "0.2852671772", "0.3080131213", "0.3263190328", "0.3072870698", "0.6002277288", "0.3450693501", "0.2637082941", "0.2704736003", "0.2730811804", "0.2698494384", "0.2728228201", "0.2679242152", "0.2683092505", "0.2624943397", "0.2545331501", "0.1961109721", "0.2016233721", "0.1958825388", "0.1680362682", "0.1745580123", "0.2036600095", "0.1775831227", "0.1755670951", "0.1963215007", "0.193981606", 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[ "4abz", "Lcyst", "ac", "acald", "adocbl", "ala_L", "alaasp", "alahis", "arbt", "arg_L", "arsenb", "asn_L", "asp_L", "btn", "but", "butso3", "ca2", "cbl1", "cbl2", "cd2", "cgly", "cit", "cl", "co2", "cobalt2", "cro4", "ctbt", "cu2", "cys_L", "dpcoa", "dtmp", "ethso3", "etoh", "fe2", "fe3", "for", "fru", "fum", "gbbtn", "gln_L", "glu_L", "glutar", "gly", "glyb", "h2", "h2o", "h2s", "h", "hexs", "hg2", "his_L", "hxan", "ile_L", "isetac", "k", "lac_D", "leu_L", "lys_L", "met_D", "met_L", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mops", "mso3", "na1", "nac", "nh4", "nmn", "o2", "orn", "pb", "pi", "pnto_R", "pro_L", "ptrc", "pydx", "ribflv", "salcn", "ser_L", "so4", "spmd", "succ", "sulfac", "taur", "thymd", "trp_L", "ura", "urea", "val_L", "xan", "zn2" ]
103
Bacteroides_intestinalis_341_DSM_17393
1,402
{ "k": 103, "tax_distance": [ "2.4785983096", "1.1108976781", "1.104198449", "1.3307811561", "1.0121810822", "1.0573097691", "1.0386044713", "1.035661877", "1.0996434753", "1.0179993834", "1.0350640868", "1.1431864006", "1.1162041789", "1.3442181368", "1.3925749539", "1.4229074645", "1.3032570666", "1.3121811834", "1.347655659", "0.880639975", "0.8159689983", "0.5654477396", "0.4987973072", "0.3773176305", "0.2031383517", "0.1973271436", "0.1939725722", "0.1963336266", "0.1805673366", "0.1718815737", "0.1743324798", "0.2759184159", "0.2854562187", "0.2818223087", "0.2975183773", "0.2660167973", "0.2887627414", "0.3070686529", "0.2880366899", "0.5809773489", "0.3258189702", "0.2444579142", "0.2512232204", "0.2538308005", "0.2505990585", "0.2535724402", "0.2486738353", "0.2490588706", "0.2432439598", "0.2352827702", "0.1768605922", "0.1823729922", "0.1766321589", "0.1487858883", "0.1553076324", "0.1844096296", "0.1583327428", "0.1563167152", "0.1770711208", "0.1747312261", 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[ "12dgr180", "26dap_M", "2dmmq8", "2hyoxplac", "2obut", "34dhphe", "3mop", "4abut", "4abz", "4hoxpacd", "4hphac", "5htrp", "HC00319", "Lcyst", "Lkynr", "ac", "acac", "acald", "acgam", "adn", "ala_D", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "alltn", "arbt", "arg_L", "asn_L", "asp_L", "bhb", "but", "butso3", "ca2", "cd2", "cgly", "chol", "chor", "cl", "co2", "cobalt2", "csn", "cu2", "cynt", "cys_L", "cytd", "dad_2", "dopa", "etha", "ethso3", "etoh", "fe2", "fe3", "fecrm", "for", "fru", "fum", "galct_D", "galctn_D", "galt", "gam", "gcald", "glc_D", "glcr", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyb", "glyc", "glyclt", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hdca", "hexs", "hg2", "his_L", "hista", "hxan", "ile_L", "ind3ac", "ins", "isetac", "k", "lac_D", "lac_L", "leu_L", "lys_L", "mal_L", "malt", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn8", "mso3", "na1", "nac", "ncam", "nh4", "no2", "no3", "o2", "ocdca", "ocdcea", "orn", "pac", "pb", "phe_L", "pheme", "phpyr", "pi", "ppa", "ppi", "pro_L", "pydam", "pydx", "pydxn", "q8", "salcn", "sbt_D", "ser_D", "ser_L", "sheme", "so4", "spmd", "srtn", "succ", "sucr", "sulfac", "taur", "thm", "thr_L", "thymd", "tre", "trp_L", "trypta", "tsul", "ttdca", "tym", "tyr_L", "ura", "uri", "val_L", "xan", "zn2" ]
104
Bacteroides_massiliensis_B846dnLKV334
1,038
{ "k": 104, "tax_distance": [ "2.4914767986", "1.1237761671", "1.117076938", "1.3436596451", "1.0250595712", "1.0701882581", "1.0514829603", "1.048540366", "1.1125219643", "1.0308778724", "1.0479425758", "1.1560648896", "1.1290826679", "1.3570966258", "1.4054534429", "1.4357859535", "1.3161355556", "1.3250596724", "1.360534148", "0.893518464", "0.8288474873", "0.5783262286", "0.5116757962", "0.3901961195", "0.2160168407", "0.2102056326", "0.2068510612", "0.2092121156", "0.1934458256", "0.1847600627", "0.1872109688", "0.2887969049", "0.2983347077", "0.2947007977", "0.3103968663", "0.2788952863", "0.3016412304", "0.3199471419", "0.3009151789", "0.5938558379", "0.3386974592", "0.2573364032", "0.2641017094", "0.2667092895", "0.2634775475", "0.2664509292", "0.2615523243", "0.2619373596", "0.2561224488", "0.2481612592", "0.1897390812", "0.1952514812", "0.1895106479", "0.1616643773", "0.1681861214", "0.1972881186", "0.1712112318", "0.1691952042", "0.1899496098", "0.1876097151", 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[ "12dgr180", "26dap_M", "2dmmq8", "2hyoxplac", "2obut", "34dhphe", "3mop", "4abz", "4hoxpacd", "4hphac", "5htrp", "HC00319", "Lcyst", "Lkynr", "ac", "acac", "acgam", "adn", "adocbl", "ala_D", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "alltn", "arbt", "arg_L", "asn_L", "asp_L", "bhb", "but", "butso3", "ca2", "cbl1", "cbl2", "cd2", "cgly", "chol", "chor", "cit", "cl", "co2", "cobalt2", "csn", "cu2", "cynt", "cys_L", "cytd", "dad_2", "dopa", "ethso3", "fe2", "fe3", "fecrm", "for", "fru", "fum", "galct_D", "galctn_D", "galt", "gam", "gcald", "glc_D", "glcr", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyb", "glyc", "glyclt", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hdca", "hexs", "hg2", "his_L", "hista", "hxan", "ile_L", "ins", "isetac", "k", "lac_D", "lac_L", "leu_L", "lys_L", "mal_L", "malt", "malthx", "malttr", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn8", "mso3", "na1", "nac", "ncam", "nh4", "no2", "no3", "o2", "ocdca", "ocdcea", "orn", "pac", "pb", "phe_L", "pheme", "phpyr", "pi", "ppa", "ppi", "pro_L", "ptrc", "pydam", "pydx", "pydxn", "q8", "salcn", "sbt_D", "ser_D", "ser_L", "sheme", "so4", "srtn", "succ", "sucr", "sulfac", "taur", "thm", "thr_L", "thymd", "tre", "trp_L", "trypta", "tsul", "ttdca", "tym", "tyr_L", "ura", "uri", "val_L", "xan", "zn2" ]
105
Bacteroides_nordii_CL02T12C05
1,071
{ "k": 105, "tax_distance": [ "2.5503492436", "1.1826486121", "1.175949383", "1.4025320901", "1.0839320162", "1.1290607031", "1.1103554053", "1.107412811", "1.1713944093", "1.0897503174", "1.1068150208", "1.2149373346", "1.1879551129", "1.4159690708", "1.4643258879", "1.4946583985", "1.3750080006", "1.3839321174", "1.419406593", "0.952390909", "0.8877199323", "0.6371986736", "0.5705482412", "0.4490685645", "0.2748892857", "0.2690780776", "0.2657235062", "0.2680845606", "0.2523182706", "0.2436325077", "0.2460834138", "0.3476693499", "0.3572071527", "0.3535732427", "0.3692693113", "0.3377677313", "0.3605136754", "0.3788195869", "0.3597876239", "0.6527282829", "0.3975699042", "0.3162088482", "0.3229741544", "0.3255817345", "0.3223499925", "0.3253233742", "0.3204247693", "0.3208098046", "0.3149948938", "0.3070337042", "0.2486115262", "0.2541239262", "0.2483830929", "0.2205368223", "0.2270585664", "0.2561605636", "0.2300836768", "0.2280676492", "0.2488220548", "0.2464821601", 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[ "26dap_M", "34dhphe", "3mop", "4abz", "5htrp", "Lcyst", "ac", "acald", "acgam", "akg", "ala_D", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "arbt", "arg_L", "asn_L", "asp_L", "but", "butso3", "ca2", "cd2", "cgly", "chol", "cit", "cl", "co2", "cobalt2", "cu2", "cys_L", "dopa", "etha", "ethso3", "etoh", "fe2", "fe3", "fecrm", "fru", "fum", "galt", "gam", "gcald", "glc_D", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyb", "glyc", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hdca", "hexs", "hg2", "his_L", "hista", "hxan", "ile_L", "isetac", "k", "leu_L", "lys_L", "mal_L", "malt", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn7", "mso3", "na1", "nac", "nh4", "no2", "no3", "o2", "ocdca", "pb", "phe_L", "pheme", "pi", "ppa", "ppi", "pro_L", "pydam", "pydx", "pydxn", "salcn", "sbt_D", "ser_D", "ser_L", "so4", "spmd", "srtn", "succ", "sucr", "sulfac", "taur", "thm", "thr_L", "tre", "trp_L", "trypta", "tsul", "ttdca", "tym", "tyr_L", "ura", "val_L", "xan", "zn2" ]
106
Bacteroides_oleiciplenus_YIT_12058
889
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"1.4148069789", "1.3879390558", "1.3958841139", "1.3990263233", "1.3703066078" ] }
[ "12dgr180", "26dap_M", "2dmmq8", "2hyoxplac", "2obut", "34dhphe", "3mop", "4abut", "4abz", "4hphac", "5htrp", "Lcyst", "ac", "acac", "acald", "acgam", "adn", "akg", "ala_D", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "arbt", "arg_L", "asn_L", "asp_L", "bhb", "but", "butso3", "ca2", "cd2", "cgly", "chol", "cl", "co2", "cobalt2", "csn", "cu2", "cys_L", "cytd", "dad_2", "dopa", "etha", "ethso3", "etoh", "fe2", "fe3", "for", "fru", "galt", "gam", "gcald", "glc_D", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyc", "glyclt", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hexs", "hg2", "his_L", "hista", "hxan", "ile_L", "isetac", "k", "lac_D", "lac_L", "leu_L", "lys_L", "mal_L", "malt", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn8", "mso3", "na1", "nac", "nh4", "no2", "no3", "o2", "ocdcea", "orn", "pb", "phe_L", "pheme", "pi", "ppa", "ppi", "pro_L", "ptrc", "pydam", "pydx", "pydxn", "q8", "salcn", "sbt_D", "ser_D", "ser_L", "sheme", "so4", "spmd", "srtn", "succ", "sucr", "sulfac", "taur", "thm", "thr_L", "thymd", "tre", "trp_L", "trypta", "tsul", "tym", "tyr_L", "ura", "uri", "val_L", "xan", "zn2" ]
107
Bacteroides_ovatus_ATCC_8483
1,202
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"1.4817032362", "1.4548353131", "1.4627803712", "1.4659225806", "1.4372028651" ] }
[ "2hyoxplac", "4hphac", "Lcyst", "ac", "acald", "akg", "ala_D", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "arg_L", "asn_L", "asp_L", "btn", "butso3", "ca2", "cd2", "cgly", "chol", "cl", "co2", "cobalt2", "csn", "cu2", "cys_L", "ddca", "etha", "ethso3", "etoh", "fe2", "fe3", "for", "fru", "fum", "gcald", "glc_D", "glcn", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyc", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "h2", "h2o", "h2s", "h", "hdca", "hexs", "hg2", "his_L", "hxan", "ile_L", "isetac", "k", "lac_D", "lac_L", "leu_L", "lys_L", "mal_L", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mops", "mso3", "na1", "nac", "nh4", "no2", "no3", "o2", "ocdca", "oxa", "pb", "phe_L", "pi", "ppa", "ppi", "pro_L", "ser_D", "ser_L", "so4", "succ", "sulfac", "taur", "thr_L", "trp_L", "tsul", "ttdca", "tyr_L", "ura", "urea", "val_L", "xan", "zn2" ]
108
Bacteroides_ovatus_SD_CC_2a
872
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"1.4478639802", "1.4209960571", "1.4289411152", "1.4320833246", "1.4033636091" ] }
[ "12dgr180", "26dap_M", "2dmmq8", "2hyoxplac", "2obut", "3mop", "4abz", "Lcyst", "ac", "acac", "acgam", "ala_D", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "arbt", "arg_L", "asn_L", "asp_L", "bhb", "but", "butso3", "ca2", "cd2", "cgly", "chol", "cl", "co2", "cobalt2", "csn", "cu2", "cys_L", "cytd", "dad_2", "etha", "ethso3", "fe2", "fe3", "for", "fru", "galt", "gam", "gcald", "glc_D", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyc", "glyclt", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hexs", "hg2", "his_L", "hxan", "ile_L", "isetac", "k", "lac_D", "lac_L", "leu_L", "lys_L", "malt", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn8", "mso3", "na1", "nac", "nh4", "no2", "no3", "o2", "ocdcea", "orn", "pb", "phe_L", "pheme", "pi", "ppa", "ppi", "pro_L", "pydam", "pydx", "pydxn", "q8", "salcn", "sbt_D", "ser_D", "ser_L", "sheme", "so4", "spmd", "succ", "sucr", "sulfac", "taur", "thm", "thr_L", "thymd", "tre", "trp_L", "tsul", "tyr_L", "ura", "uri", "val_L", "xan", "zn2" ]
109
Bacteroides_ovatus_SD_CMC_3f
945
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"1.3910904491", "1.3850553394", "1.3581874163", "1.3661324744", "1.3692746838", "1.3405549683" ] }
[ "12dgr180", "26dap_M", "2dmmq8", "2hyoxplac", "2obut", "34dhphe", "3mop", "4abz", "4hoxpacd", "5htrp", "HC00319", "Lcyst", "ac", "acac", "acald", "acgam", "adn", "adocbl", "ala_D", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "alltn", "arbt", "arg_L", "asn_L", "asp_L", "bhb", "but", "butso3", "ca2", "cbl1", "cbl2", "cd2", "cgly", "chol", "chor", "cit", "cl", "co2", "cobalt2", "csn", "cu2", "cys_L", "cytd", "dad_2", "dopa", "etha", "ethso3", "etoh", "fe2", "fe3", "for", "fru", "fum", "galct_D", "galt", "gam", "gcald", "glc_D", "glcr", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyb", "glyc", "glyclt", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hdca", "hexs", "his_L", "hista", "hxan", "ile_L", "ind3ac", "ins", "isetac", "k", "lac_D", "lac_L", "leu_L", "lys_L", "mal_L", "malt", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn8", "mso3", "na1", "nac", "ncam", "nh4", "nmn", "no2", "no3", "o2", "ocdca", "ocdcea", "orn", "phe_L", "pheme", "pi", "ppa", "ppi", "pro_L", "ptrc", "pydam", "pydx", "pydxn", "q8", "salcn", "sbt_D", "ser_D", "ser_L", "sheme", "so4", "spmd", "srtn", "succ", "sucr", "sulfac", "taur", "thm", "thr_L", "thymd", "tre", "trp_L", "trypta", "tsul", "ttdca", "tym", "tyr_L", "ura", "uri", "val_L", "zn2" ]
11
Acinetobacter_junii_SH205
850
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"2.2160460152", "2.1891780921", "2.1971231502", "2.2002653596", "2.1715456441" ] }
[ "12dgr180", "26dap_M", "2dmmq8", "2hyoxplac", "2obut", "34dhphe", "3mop", "4abut", "4abz", "5htrp", "7dhcdchol", "7ocholate", "C02528", "HC00319", "Lcyst", "ac", "acac", "acgam", "adn", "ala_D", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "arbt", "arg_L", "asn_L", "asp_L", "but", "butso3", "ca2", "cd2", "cgly", "chol", "cholate", "cl", "co2", "cobalt2", "csn", "cu2", "cys_L", "cytd", "dad_2", "dhcinnm", "dhpppn", "dopa", "ethso3", "fe2", "fe3", "fecrm", "fol", "for", "fru", "fum", "galt", "gam", "gcald", "glc_D", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyc", "glyclt", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hdca", "hexs", "hg2", "his_L", "hista", "hxan", "ile_L", "isetac", "k", "lac_D", "lac_L", "leu_L", "lys_L", "mal_L", "malt", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mops", "mqn8", "mso3", "na1", "nac", "nh4", "no2", "no3", "o2", "ocdca", "ocdcea", "orn", "pb", "phe_L", "pheme", "pi", "ppa", "ppi", "pro_L", "pydam", "pydx", "pydxn", "q8", "salcn", "sbt_D", "ser_D", "ser_L", "sheme", "so4", "spmd", "srtn", "succ", "sucr", "sulfac", "taur", "thm", "thr_L", "thymd", "tre", "trp_L", "trypta", "tsul", "ttdca", "tym", "tyr_L", "ura", "uri", "val_L", "xan", "zn2" ]
110
Bacteroides_pectinophilus_ATCC_43243
1,633
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[ "2dmmq8", "2obut", "34dhphe", "3mop", "4abz", "4hbz", "5htrp", "ac", "acald", "acgam", "acnam", "ade", "akg", "ala_L", "alaasp", "alagln", "alaglu", "alagly", "alahis", "alaleu", "alathr", "arbt", "arg_L", "asn_L", "asp_L", "ca2", "cd2", "cgly", "chol", "cit", "cl", "co2", "cobalt2", "csn", "cu2", "cys_L", "cytd", "dad_2", "dcyt", "dgsn", "dms", "dmso", "dopa", "drib", "etoh", "fe2", "fe3", "for", "fru", "fum", "gal", "galt", "gam", "gcald", "glc_D", "gln_L", "glu_L", "gly", "glyasn", "glyasp", "glyc3p", "glyc", "glyclt", "glycys", "glygln", "glyglu", "glyleu", "glymet", "glyphe", "glypro", "glytyr", "gthrd", "gua", "h2o", "h2s", "h", "hdca", "hg2", "his_L", "hista", "hxan", "ile_L", "ins", "k", "lac_D", "lac_L", "leu_L", "lys_L", "mal_L", "malt", "malthx", "malttr", "man", "met_D", "met_L", "metala", "metsox_R_L", "metsox_S_L", "mg2", "mn2", "mnl", "mqn8", "na1", "nac", "ncam", "nh4", "nmn", "no2", "no3", "no", "o2", "ocdca", "ocdcea", "orn", "pb", "phe_L", "pi", "pnto_R", "ppa", "ppi", "pppn", "pro_L", "pydam", "pydx", "pydxn", "q8", "rib_D", "salcn", "sbt_D", "ser_L", "sheme", "so4", "srtn", "succ", "sucr", "thm", "thr_L", "thymd", "tre", "trp_L", "trypta", "tsul", "ttdca", "tym", "tyr_L", "ura", "urea", "uri", "val_L", "xan", "xyl_D", "zn2" ]
End of preview.