Added instructions for processing

README.md

@@ -59,6 +59,30 @@ configs:
 
 # Dataset Card for VLM4Bio
 
+## **Instructions for downloading the dataset**
+
+* Install [Git LFS](https://docs.github.com/en/repositories/working-with-files/managing-large-files/installing-git-large-file-storage)
+* Git clone the VLM4Bio repository to download all metadata and associated files
+  * Run the following commands in a **terminal**:
+```bash
+git clone https://huggingface.co/datasets/imageomics/VLM4Bio
+cd VLM4Bio
+```
+
+**Downloading and processing bird images**
+* To download the bird images, run the following command:
+```bash
+bash download_bird_images.sh
+```
+* This should download the bird images inside `datasets/Bird/images`
+
+**Processing fish and butterfly images**:
+* Run the following command:
+```bash 
+bash process_fish_butterfly_images.sh
+```
+* This should process fish and butterfly images inside `datasets/Fish/images` and `datasets/Butterfly/images` respectively. 
+
 ![Alt text](assests/teaser.png)
 
 ## Dataset Details
@@ -86,8 +110,38 @@ The following table demonstrates the leaderboard of the VLM baselines in terms o
 English, Latin
 
 ## Dataset Structure
+After downloading and processing the dataset, VLM4Bio should have the following structure:
 
-**Instructions for downloading the dataset**
+```
+VLM4Bio/
+    └── datasets/
+        ├── Fish/
+        │   ├── images/
+        │   │   ├── INHS_FISH_58870.jpg
+        │   │   ├── INHS_FISH_58819.jpg
+        │   │   └── ...
+        │   └── metadata/
+        │       ├── metadata_10k.csv
+        │       ├── metadata_500.csv
+        │       └── ...
+        ├── Bird/
+        │   ├── images/
+        │   │   ├── Ivory_Gull_0117_49227.jpg
+        │   │   ├── Yellow_Warbler_0026_176337.jpg
+        │   │   └── ...
+        │   └── metadata/
+        │       ├── bird_metadata_10k.csv
+        │       ├── identification.csv
+        │       └── ...
+        └── Butterfly/
+            ├── images/
+            │   ├── butterfly_train_heliconius_sara_0007.jpg
+            │   ├── butterfly_val_pyrrhogyra_cramen_0001.jpg
+            │   └── ...
+            └── metadata/
+                ├── metadata.csv
+                └── imagelist.csv
+```
 
 ### Data Instances
 <!--
@@ -96,6 +150,7 @@ Describe data files
 Ex: All images are named <img_id>.png, each within a folder named for the species. They are 1024 x 1024, and the color has been standardized using <link to color standardization package>.
 -->
 
+
 ### Data Fields
 
 **Fish Files:**

process_fish_butterfly_images.sh

@@ -0,0 +1,15 @@
+#!/bin/bash
+
+echo "Processing fish images..."
+
+mkdir datasets/Fish/images
+mv -v datasets/Fish/chunk*/** datasets/Fish/images
+rm -rf datasets/Fish/chunk*
+
+echo "Processing butterfly images..."
+
+mkdir datasets/Butterfly/images
+mv -v datasets/Butterfly/chunk*/** datasets/Butterfly/images
+rm -rf datasets/Butterfly/chunk*
+
+echo "Processing finished!"