Datasets:
Add link to paper and Github repository
Browse filesThis PR adds a link to the paper and the Github repository.
README.md
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---
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license: mit
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task_categories:
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- token-classification
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language:
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- en
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tags:
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- biology
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pretty_name: Protap
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configs:
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-
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data_files:
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- split: test
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path:
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- "PROTACs/PROTAC_clean_structure_label.txt"
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- "PROTACs/protac_poi_e3ligase_structure.json"
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- "PROTACs/e3_ligand/*"
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- "PROTACs/linker/*"
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- "PROTACs/warhead/*"
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- 100K<n<1M
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---
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---
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language:
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- en
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license: mit
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size_categories:
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- 100K<n<1M
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task_categories:
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- other
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pretty_name: Protap
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tags:
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- biology
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configs:
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- config_name: AFP
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data_files:
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- split: test
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path:
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- AFP/nrPDB-GO_test.csv
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- config_name: PCSP
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data_files:
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- split: train
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path:
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- PCSP/train_C14005.pkl
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- PCSP/train_M10003.pkl
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- split: test
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path:
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- PCSP/test_C14005.pkl
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- PCSP/test_M10003.pkl
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- config_name: PLI_DAVIS
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data_files:
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- split: test
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path:
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- PLI_DAVIS/davis_drug_pdb_data.txt
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- PLI_DAVIS/pli_structure.json
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- PLI_DAVIS/data/*
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- config_name: PROTACs
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data_files:
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- split: test
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path:
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- PROTACs/PROTAC_clean_structure_label.txt
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- PROTACs/protac_poi_e3ligase_structure.json
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- PROTACs/e3_ligand/*
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- PROTACs/linker/*
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- PROTACs/warhead/*
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---
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This dataset is for the paper [Protap: A Benchmark for Protein Modeling on Realistic Downstream Applications](https://huggingface.co/papers/2506.02052).
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The code for Protap is available at [https://github.com/findshuo/Protap](https://github.com/findshuo/Protap).
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